If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ), 'gf_id' => 'HOM05D000724', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000724' ), 'data_identifier' => 'HOM05D000724', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000724', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05400' => 'bna', 'A02p12870' => 'bna', 'A04p04920' => 'bna', 'A04p26530' => 'bna', 'A05p10930' => 'bna', 'A06p02020' => 'bna', 'A06p21550' => 'bna', 'A08p02300' => 'bna', 'A08p17850' => 'bna', 'A09p35970' => 'bna', 'A10p17930' => 'bna', 'Aa31LG10G2740' => 'aar', 'Aa31LG10G6620' => 'aar', 'Aa31LG1G12650' => 'aar', 'Aa31sc507G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2507' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_234.1' => 'aag', 'Actinidia03725' => 'ach', 'Actinidia06771' => 'ach', 'Actinidia06772' => 'ach', 'Actinidia07139' => 'ach', 'Actinidia10071' => 'ach', 'Actinidia13484' => 'ach', 'Actinidia21702' => 'ach', 'Actinidia21703' => 'ach', 'Actinidia24105' => 'ach', 'Actinidia26064' => 'ach', 'Actinidia30280' => 'ach', 'Actinidia30877' => 'ach', 'Actinidia31388' => 'ach', 'Actinidia32365' => 'ach', 'Actinidia32702' => 'ach', 'Actinidia32703' => 'ach', 'Actinidia38284' => 'ach', 'Actinidia38285' => 'ach', 'Ah.01g002970' => 'amhyb', 'Ah.01g005710' => 'amhyb', 'Ah.01g014300' => 'amhyb', 'Ah.01g021890' => 'amhyb', 'Ah.10g034940' => 'amhyb', 'Ah.16g105870' => 'amhyb', 'AL1G44520' => 'aly', 'AL1G60240' => 'aly', 'AL4G30700' => 'aly', 'AL7G18830' => 'aly', 'AL8G37280' => 'aly', 'Aqoxy1G01233' => 'aox', 'Aqoxy1G01568' => 'aox', 'Aqoxy7G01459' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13ME4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29D948' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EN3G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NG6S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50TKKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.532FGS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88JQDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8R9Q2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97AX4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL50RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5R23C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EKKA5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES5BWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9ZQVQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4BZXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJSB6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0PHYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2TCXD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ITJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU36TG' => 'arhy', 'AT1G30490' => 'ath', 'AT1G52150' => 'ath', 'AT2G34710' => 'ath', 'AT4G32880' => 'ath', 'AT5G32670' => 'ath', 'AT5G60690' => 'ath', 'ATR0048G047' => 'atr', 'ATR0165G014' => 'atr', 'ATR0705G054' => 'atr', 'Atru.chr1.3511' => 'acertr', 'Atru.chr10.853' => 'acertr', 'Atru.chr3.3617' => 'acertr', 'Atru.chr3.3620' => 'acertr', 'Atru.chr7.2078' => 'acertr', 'AUR62009262' => 'cqu', 'AUR62022184' => 'cqu', 'AUR62024965' => 'cqu', 'AUR62031889' => 'cqu', 'AUR62040004' => 'cqu', 'AUR62042187' => 'cqu', 'AUR62042444' => 'cqu', 'AUR62044008' => 'cqu', 'AUR62044151' => 'cqu', 'BcaB01g01105' => 'bca', 'BcaB03g12769' => 'bca', 'BcaB04g17167' => 'bca', 'BcaB05g22661' => 'bca', 'BcaB06g28794' => 'bca', 'BcaB07g32660' => 'bca', 'BcaB07g32684' => 'bca', 'BcaB08g36371' => 'bca', 'BcaC01g00061' => 'bca', 'BcaC01g01309' => 'bca', 'BcaC01g01983' => 'bca', 'BcaC01g03711' => 'bca', 'BcaC02g10353' => 'bca', 'BcaC03g13946' => 'bca', 'BcaC03g15910' => 'bca', 'BcaC04g19731' => 'bca', 'BcaC04g20014' => 'bca', 'BcaC06g36082' => 'bca', 'BcaC07g41151' => 'bca', 'BcaC08g43371' => 'bca', 'BcaC08g44366' => 'bca', 'BcaC09g52087' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00100' => 'bna', 'BolC1t00592H' => 'bol', 'BolC2t07228H' => 'bol', 'BolC3t19243H' => 'bol', 'BolC3t20992H' => 'bol', 'BolC3t21368H' => 'bol', 'BolC3t21370H' => 'bol', 'BolC4t22994H' => 'bol', 'BolC4t27864H' => 'bol', 'BolC5t31679H' => 'bol', 'BolC6t35828H' => 'bol', 'BolC6t37007H' => 'bol', 'BolC7t41223H' => 'bol', 'BolC8t51707H' => 'bol', 'BolC9t57726H' => 'bol', 'BolC9t58216H' => 'bol', 'BraA01t00514Z' => 'bra', 'BraA02t05711Z' => 'bra', 'BraA03t15004Z' => 'bra', 'BraA04t16205Z' => 'bra', 'BraA04t18157Z' => 'bra', 'BraA05t20039Z' => 'bra', 'BraA06t23418Z' => 'bra', 'BraA06t25241Z' => 'bra', 'BraA07t28921Z' => 'bra', 'BraA08t32275Z' => 'bra', 'BraA08t33735Z' => 'bra', 'BraA08t33775Z' => 'bra', 'BraA09t37154Z' => 'bra', 'BraA09t39121Z' => 'bra', 'BraA10t43868Z' => 'bra', 'C01p06000' => 'bna', 'C02p11530' => 'bna', 'C03p42250' => 'bna', 'C03p69830' => 'bna', 'C03p86920' => 'bna', 'C03p90460' => 'bna', 'C04p14030' => 'bna', 'C04p63950' => 'bna', 'C05p29490' => 'bna', 'C06p07390' => 'bna', 'C06p18010' => 'bna', 'C07p08050' => 'bna', 'C08p41460' => 'bna', 'C09p48790' => 'bna', 'C09p53420' => 'bna', 'CAN.G1113.2' => 'can', 'CAN.G1520.1' => 'can', 'CAN.G1520.2' => 'can', 'CAN.G260.4' => 'can', 'CAN.G438.3' => 'can', 'CAN.G446.2' => 'can', 'CAN.G446.3' => 'can', 'CAN.G631.32' => 'can', 'CAN.G8.13' => 'can', 'CANSAT35G1395' => 'cansat', 'CANSAT54G1185' => 'cansat', 'CANSAT56G0161' => 'cansat', 'CARHR029860' => 'chi', 'CARHR029900' => 'chi', 'CARHR042280' => 'chi', 'CARHR128830' => 'chi', 'CARHR128870' => 'chi', 'CARHR150760' => 'chi', 'CARHR240880' => 'chi', 'CARHR274370' => 'chi', 'Carub.0001s2871' => 'cru', 'Carub.0001s4109' => 'cru', 'Carub.0004s1640' => 'cru', 'Carub.0007s0761' => 'cru', 'Carub.0008s2137' => 'cru', 'Ca_00839_v3' => 'car', 'Ca_01158_v3' => 'car', 'Ca_01407_v3' => 'car', 'Ca_15584_v3' => 'car', 'Ca_17850_v3' => 'car', 'Ca_19264_v3' => 'car', 'Ca_23245_v3' => 'car', 'CBR_g84829' => 'cbr', 'CBR_g84830' => 'cbr', 'Cc01_g04210' => 'ccan', 'Cc01_g11090' => 'ccan', 'Cc01_g11100' => 'ccan', 'Cc08_g09740' => 'ccan', 'Cc09_g08040' => 'ccan', 'CDE01G0688' => 'cde', 'CDE02G4571' => 'cde', 'CDE05G0088' => 'cde', 'CDE05G3683' => 'cde', 'CDE12G0760' => 'cde', 'Cfa000821' => 'cfa', 'Cfa003659' => 'cfa', 'Cfa011311' => 'cfa', 'Cfa013376' => 'cfa', 'Ciclev10007435m.g' => 'ccl', 'Ciclev10014266m.g' => 'ccl', 'Ciclev10024891m.g' => 'ccl', 'Ciclev10027790m.g' => 'ccl', 'CiPaw.01G232500' => 'cil', 'CiPaw.02G146500' => 'cil', 'CiPaw.07G203400' => 'cil', 'CiPaw.08G026400' => 'cil', 'CiPaw.09G115500' => 'cil', 'CiPaw.10G085700' => 'cil', 'CiPaw.13G113800' => 'cil', 'CiPaw.14G081100' => 'cil', 'ClCG01G013660' => 'cla', 'ClCG01G025120' => 'cla', 'ClCG02G021180' => 'cla', 'ClCG03G006280' => 'cla', 'ClCG09G000100' => 'cla', 'ClCG11G015110' => 'cla', 'COL.COLO4_18326' => 'col', 'COL.COLO4_20981' => 'col', 'COL.COLO4_26831' => 'col', 'COL.COLO4_30489' => 'col', 'Cpa.g.sc109.22' => 'cpa', 'Cpa.g.sc545.3' => 'cpa', 'CsaV3_1G014020' => 'csa', 'CsaV3_1G037340' => 'csa', 'CsaV3_3G048510' => 'csa', 'CsaV3_6G013930' => 'csa', 'CsaV3_6G052310' => 'csa', 'CsaV3_7G035370' => 'csa', 'CSS0004529' => 'camsi', 'CSS0009114' => 'camsi', 'CSS0012269' => 'camsi', 'CSS0014162' => 'camsi', 'CSS0018397' => 'camsi', 'CSS0022142' => 'camsi', 'CSS0024393' => 'camsi', 'CSS0027784' => 'camsi', 'CSS0029854' => 'camsi', 'CSS0035091' => 'camsi', 'CSS0044392' => 'camsi', 'DCAR_003857' => 'dca', 'DCAR_003873' => 'dca', 'DCAR_006066' => 'dca', 'DCAR_007580' => 'dca', 'DCAR_007844' => 'dca', 'DCAR_015187' => 'dca', 'DCAR_019168' => 'dca', 'DCAR_022744' => 'dca', 'DCAR_023074' => 'dca', 'DCAR_027865' => 'dca', 'DCAR_031355' => 'dca', 'Dinv01048' => 'din', 'Dinv05958' => 'din', 'Dinv06445' => 'din', 'Dinv07811' => 'din', 'Dinv23376' => 'din', 'Dinv27910' => 'din', 'Dinv30447' => 'din', 'Dinv32738' => 'din', 'Dinv35123' => 'din', 'Dinv36439' => 'din', 'Dinv37989' => 'din', 'Duzib150G1256' => 'dzi', 'Duzib160G0869' => 'dzi', 'Duzib168G2192' => 'dzi', 'Duzib170G0910' => 'dzi', 'Duzib187G1334' => 'dzi', 'Duzib192G0086' => 'dzi', 'Duzib192G0982' => 'dzi', 'Duzib235G0392' => 'dzi', 'Duzib235G0731' => 'dzi', 'ECA232G2903' => 'eca', 'ECA233G5328' => 'eca', 'ECA233G5471' => 'eca', 'ECA234G2962' => 'eca', 'ECA238G2904' => 'eca', 'ECA240G2952' => 'eca', 'ECA247G2081' => 'eca', 'EL10Ac2g04000' => 'bvu', 'EL10Ac9g22097' => 'bvu', 'EL10Ac9g22528' => 'bvu', 'EL10As1g23057' => 'bvu', 'Eucgr.B02504' => 'egr', 'Eucgr.C00605' => 'egr', 'Eucgr.D00184' => 'egr', 'Eucgr.F03066' => 'egr', 'FAN02G2605' => 'fan', 'FAN05G0247' => 'fan', 'FAN09G3594' => 'fan', 'FAN11G0228' => 'fan', 'FAN11G1058' => 'fan', 'FAN14G1579' => 'fan', 'FAN15G0627' => 'fan', 'FAN16G2844' => 'fan', 'FAN16G3188' => 'fan', 'FAN20G1171' => 'fan', 'FAN21G1031' => 'fan', 'FAN21G2811' => 'fan', 'FAN24G3050' => 'fan', 'FAN25G0453' => 'fan', 'FAN25G3103' => 'fan', 'FAN27G0754' => 'fan', 'FvH4_2g35360' => 'fve', 'FvH4_3g10070' => 'fve', 'FvH4_3g32190' => 'fve', 'FvH4_6g32240' => 'fve', 'Glyma.04G085000' => 'gma', 'Glyma.05G101500' => 'gma', 'Glyma.05G166400' => 'gma', 'Glyma.06G086600' => 'gma', 'Glyma.07G016500' => 'gma', 'Glyma.07G016700' => 'gma', 'Glyma.08G124400' => 'gma', 'Glyma.08G201900' => 'gma', 'Glyma.08G202000' => 'gma', 'Glyma.08G252101' => 'gma', 'Glyma.09G023600' => 'gma', 'Glyma.11G145800' => 'gma', 'Glyma.12G075800' => 'gma', 'Glyma.15G129700' => 'gma', 'Gohir.A02G073500' => 'ghi', 'Gohir.A03G033200' => 'ghi', 'Gohir.A05G046100' => 'ghi', 'Gohir.A05G103500' => 'ghi', 'Gohir.A05G128600' => 'ghi', 'Gohir.A06G082500' => 'ghi', 'Gohir.A06G092400' => 'ghi', 'Gohir.A06G133900' => 'ghi', 'Gohir.A07G022300' => 'ghi', 'Gohir.A08G198400' => 'ghi', 'Gohir.A10G003800' => 'ghi', 'Gohir.A12G075500' => 'ghi', 'Gohir.A12G092222' => 'ghi', 'Gohir.A13G230700' => 'ghi', 'Gohir.D03G135100' => 'ghi', 'Gohir.D05G047800' => 'ghi', 'Gohir.D05G103300' => 'ghi', 'Gohir.D05G133100' => 'ghi', 'Gohir.D06G092000' => 'ghi', 'Gohir.D07G025700' => 'ghi', 'Gohir.D07G075401' => 'ghi', 'Gohir.D08G215800' => 'ghi', 'Gohir.D10G003800' => 'ghi', 'Gohir.D11G288800' => 'ghi', 'Gohir.D13G236200' => 'ghi', 'Gorai.001G026800' => 'gra', 'Gorai.003G142200' => 'gra', 'Gorai.004G072500' => 'gra', 'Gorai.004G229400' => 'gra', 'Gorai.007G312600' => 'gra', 'Gorai.009G049100' => 'gra', 'Gorai.009G107500' => 'gra', 'Gorai.009G136800' => 'gra', 'Gorai.010G105900' => 'gra', 'Gorai.011G004200' => 'gra', 'Gorai.013G102000' => 'gra', 'Gorai.013G266900' => 'gra', 'GSVIVG01016272001' => 'vvi', 'GSVIVG01017010001' => 'vvi', 'GSVIVG01021625001' => 'vvi', 'GSVIVG01025193001' => 'vvi', 'GSVIVG01035612001' => 'vvi', 'HanXRQChr01g0018141' => 'han', 'HanXRQChr02g0032221' => 'han', 'HanXRQChr02g0050611' => 'han', 'HanXRQChr02g0055811' => 'han', 'HanXRQChr04g0096011' => 'han', 'HanXRQChr07g0196731' => 'han', 'HanXRQChr08g0216221' => 'han', 'HanXRQChr09g0250021' => 'han', 'HanXRQChr09g0250031' => 'han', 'HanXRQChr09g0250041' => 'han', 'HanXRQChr09g0270011' => 'han', 'HanXRQChr10g0313261' => 'han', 'HanXRQChr12g0360991' => 'han', 'HanXRQChr12g0373251' => 'han', 'HanXRQChr13g0396801' => 'han', 'HanXRQChr13g0402191' => 'han', 'HanXRQChr14g0427361' => 'han', 'HanXRQChr14g0452731' => 'han', 'HanXRQChr16g0501201' => 'han', 'HanXRQChr16g0505901' => 'han', 'Haze_05818' => 'cav', 'Haze_15835' => 'cav', 'Haze_21899' => 'cav', 'Haze_23817' => 'cav', 'Hma1.2p1_0049F.1_g028480' => 'hma', 'Hma1.2p1_0058F.1_g032460' => 'hma', 'Hma1.2p1_0307F.1_g119725' => 'hma', 'Hma1.2p1_0370F.1_g137810' => 'hma', 'Hma1.2p1_0382F.1_g140125' => 'hma', 'Hma1.2p1_0382F.1_g140130' => 'hma', 'Hma1.2p1_0382F.1_g140140' => 'hma', 'Hma1.2p1_0382F.1_g140150' => 'hma', 'Hma1.2p1_0382F.1_g140160' => 'hma', 'Hma1.2p1_1404F.1_g281230' => 'hma', 'Hma1.2p1_1566F.1_g290990' => 'hma', 'HPP92_004153' => 'vpl', 'HPP92_012191' => 'vpl', 'HPP92_013993' => 'vpl', 'HPP92_026299' => 'vpl', 'HPP92_028172' => 'vpl', 'HPP92_028173' => 'vpl', 'Hund00676' => 'sun', 'Hund01366' => 'sun', 'Hund03420' => 'sun', 'Hund06657' => 'sun', 'Hund09921' => 'sun', 'Hund10903' => 'sun', 'Hund19501' => 'sun', 'Hund22553' => 'sun', 'Hund25987' => 'sun', 'Lalb_Chr03g0027391' => 'lal', 'Lalb_Chr08g0243001' => 'lal', 'Lalb_Chr14g0374631' => 'lal', 'Lalb_Chr15g0088751' => 'lal', 'Lalb_Chr18g0057951' => 'lal', 'Lalb_Chr19g0137211' => 'lal', 'Lalb_Chr20g0120041' => 'lal', 'Lalb_Chr24g0394661' => 'lal', 'Lalb_Chr24g0396121' => 'lal', 'Lalb_Chr25g0280111' => 'lal', 'Lj1A1162T42' => 'lonja', 'Lj1A193T25' => 'lonja', 'Lj1A194T69' => 'lonja', 'Lj1C193T5' => 'lonja', 'Lj1g0001383' => 'lja', 'Lj1g0013208' => 'lja', 'Lj2C1027T1' => 'lonja', 'Lj3g0000182' => 'lja', 'Lj3g0003378' => 'lja', 'Lj3g0009417' => 'lja', 'Lj3g0012587' => 'lja', 'Lj3g0018362' => 'lja', 'Lj3g0022936' => 'lja', 'Lj4g0004271' => 'lja', 'Lj5g0014567' => 'lja', 'Lj6g0009288' => 'lja', 'Lj6g0012092' => 'lja', 'Lj6g0018010' => 'lja', 'Lj7C700T1' => 'lonja', 'Lj9A525T28' => 'lonja', 'Lj9C511T7' => 'lonja', 'LjContig00081g0005378' => 'lja', 'Lsat_1_v5_gn_1_37081' => 'lsa', 'Lsat_1_v5_gn_2_100140' => 'lsa', 'Lsat_1_v5_gn_2_20280' => 'lsa', 'Lsat_1_v5_gn_4_100080' => 'lsa', 'Lsat_1_v5_gn_5_134441' => 'lsa', 'Lsat_1_v5_gn_5_32500' => 'lsa', 'Lsat_1_v5_gn_6_22720' => 'lsa', 'Lsat_1_v5_gn_6_45641' => 'lsa', 'Lsat_1_v5_gn_7_68920' => 'lsa', 'Lsat_1_v5_gn_8_135660' => 'lsa', 'Lsat_1_v5_gn_8_162580' => 'lsa', 'Lsat_1_v5_gn_8_20241' => 'lsa', 'Manes.03G059200' => 'mes', 'Manes.04G020100' => 'mes', 'Manes.04G133100' => 'mes', 'Manes.06G055000' => 'mes', 'Manes.11G034600' => 'mes', 'Manes.11G146000' => 'mes', 'Manes.14G122900' => 'mes', 'Manes.16G074600' => 'mes', 'Mapoly0061s0107' => 'mpo', 'MBI01_g21762_MAGBIO' => 'mbi', 'MBI01_g30449_MAGBIO' => 'mbi', 'MBI02_g11453_MAGBIO' => 'mbi', 'MBI02_g31763_MAGBIO' => 'mbi', 'MBI04_g06586_MAGBIO' => 'mbi', 'MBI07_g19294_MAGBIO' => 'mbi', 'MBI07_g25282_MAGBIO' => 'mbi', 'MBI11_g11979_MAGBIO' => 'mbi', 'MBI14_g15789_MAGBIO' => 'mbi', 'MBI16_g22308_MAGBIO' => 'mbi', 'MBI16_g27831_MAGBIO' => 'mbi', 'MBI18_g10576_MAGBIO' => 'mbi', 'MBI18_g23788_MAGBIO' => 'mbi', 'MD03G1118500' => 'mdo', 'MD05G1273700' => 'mdo', 'MD08G1112900' => 'mdo', 'MD09G1205400' => 'mdo', 'MD10G1253500' => 'mdo', 'MD11G1136800' => 'mdo', 'MD15G1092200' => 'mdo', 'MD16G1250100' => 'mdo', 'MD17G1185400' => 'mdo', 'Medtr2g030130' => 'mtr', 'Medtr2g094520' => 'mtr', 'Medtr2g101190' => 'mtr', 'Medtr3g109800' => 'mtr', 'Medtr4g058970' => 'mtr', 'Medtr8g013980' => 'mtr', 'MELO3C002807.2' => 'cme', 'MELO3C003468.2' => 'cme', 'MELO3C004888.2' => 'cme', 'MELO3C007078.2' => 'cme', 'MELO3C024446.2' => 'cme', 'MELO3C025774.2' => 'cme', 'MELO3C029184.2' => 'cme', 'MELO3C031501.2' => 'cme', 'MELO3C031876.2' => 'cme', 'MELO3C032652.2' => 'cme', 'MELO3C032781.2' => 'cme', 'Migut.A00196' => 'egut', 'Migut.D01005' => 'egut', 'Migut.D02228' => 'egut', 'Migut.F01757' => 'egut', 'Migut.H01331' => 'egut', 'Migut.I00906' => 'egut', 'Migut.M01891' => 'egut', 'Migut.N02597' => 'egut', 'MSTRG.13269' => 'ama', 'MSTRG.17797' => 'ama', 'MSTRG.18663' => 'ama', 'MSTRG.18664' => 'ama', 'MSTRG.25912' => 'ama', 'MSTRG.377' => 'ama', 'MSTRG.4746' => 'ama', 'MSTRG.7537' => 'ama', 'MSTRG.8145' => 'ama', 'MSTRG.9482' => 'ama', 'Nitab4.5_0001172g0010' => 'nta', 'Nitab4.5_0001298g0010' => 'nta', 'Nitab4.5_0001755g0110' => 'nta', 'Nitab4.5_0002301g0020' => 'nta', 'Nitab4.5_0003131g0030' => 'nta', 'Nitab4.5_0003515g0010' => 'nta', 'Nitab4.5_0004624g0050' => 'nta', 'Nitab4.5_0004843g0040' => 'nta', 'Nitab4.5_0006460g0030' => 'nta', 'Nitab4.5_0007840g0010' => 'nta', 'Nitab4.5_0010053g0010' => 'nta', 'Nn2g10802' => 'nnu', 'Nn2g13104' => 'nnu', 'Nn3g20228' => 'nnu', 'Nn6g35298' => 'nnu', 'Nn8g39109' => 'nnu', 'Oeu001883.1' => 'oeu', 'Oeu001884.1' => 'oeu', 'Oeu001885.1' => 'oeu', 'Oeu008953.1' => 'oeu', 'Oeu013461.1' => 'oeu', 'Oeu030190.1' => 'oeu', 'Oeu040085.1' => 'oeu', 'Oeu042737.3' => 'oeu', 'Oeu043888.1' => 'oeu', 'Oeu050604.1' => 'oeu', 'Oeu054505.1' => 'oeu', 'Oeu056311.2' => 'oeu', 'Oeu058478.1' => 'oeu', 'Oeu063937.1' => 'oeu', 'Os01g0200300' => 'osa', 'Os03g0109400' => 'osa', 'Os03g0640800' => 'osa', 'Os03g0769800' => 'osa', 'Os06g0720500' => 'osa', 'Os06g0722300' => 'osa', 'Os06g0722650' => 'osa', 'Os10g0147300' => 'osa', 'Os10g0480200' => 'osa', 'Os12g0612700' => 'osa', 'Peaxi162Scf00038g00093' => 'pax', 'Peaxi162Scf00267g00059' => 'pax', 'Peaxi162Scf00270g00419' => 'pax', 'Peaxi162Scf00654g00024' => 'pax', 'PGR031G2753' => 'pgr', 'PGR083G1203' => 'pgr', 'PGR102G0234' => 'pgr', 'PGR102G1474' => 'pgr', 'PGSC0003DMG400002616' => 'stu', 'PGSC0003DMG400011810' => 'stu', 'PGSC0003DMG400021125' => 'stu', 'PGSC0003DMG400026460' => 'stu', 'PGSC0003DMG401008054' => 'stu', 'PGSC0003DMG401029143' => 'stu', 'PGSC0003DMG402029143' => 'stu', 'Phvul.002G246800' => 'pvu', 'Phvul.005G166900' => 'pvu', 'Phvul.006G128600' => 'pvu', 'Phvul.009G110500' => 'pvu', 'Phvul.010G146200' => 'pvu', 'Phvul.011G079800' => 'pvu', 'Potri.001G188800' => 'ptr', 'Potri.001G372300' => 'ptr', 'Potri.003G050100' => 'ptr', 'Potri.004G211300' => 'ptr', 'Potri.006G237500' => 'ptr', 'Potri.009G014500' => 'ptr', 'Potri.011G098300' => 'ptr', 'Potri.018G045100' => 'ptr', 'Pp3c10_19630' => 'ppa', 'Pp3c12_14370' => 'ppa', 'Pp3c16_15450' => 'ppa', 'Pp3c3_30010' => 'ppa', 'Pp3c4_5300' => 'ppa', 'Prupe.1G447100' => 'ppe', 'Prupe.3G060700' => 'ppe', 'Prupe.4G090100' => 'ppe', 'Prupe.6G102300' => 'ppe', 'Psat0s2131g0080' => 'psa', 'Psat0s3805g0040' => 'psa', 'Psat1g167760' => 'psa', 'Psat1g198480' => 'psa', 'Psat4g059040' => 'psa', 'Psat4g221480' => 'psa', 'Psat5g020800' => 'psa', 'Psat5g279960' => 'psa', 'Psat5g297000' => 'psa', 'Psat7g225360' => 'psa', 'PSO063G3305' => 'pso', 'PSO173G0093' => 'pso', 'PSO339G0678' => 'pso', 'PSO339G3036' => 'pso', 'PSO339G6449' => 'pso', 'PSO384G4188' => 'pso', 'PSO541G2198' => 'pso', 'PSO675G0706' => 'pso', 'PSO675G1356' => 'pso', 'PSO824G0098' => 'pso', 'QL01p022031' => 'qlo', 'QL05p020467' => 'qlo', 'QL05p061797' => 'qlo', 'QL12p041248' => 'qlo', 'RcHm_v2.0_Chr1g0322901' => 'rch', 'RcHm_v2.0_Chr2g0111751' => 'rch', 'RcHm_v2.0_Chr2g0140131' => 'rch', 'RcHm_v2.0_Chr5g0015931' => 'rch', 'RcHm_v2.0_Chr5g0058801' => 'rch', 'RcHm_v2.0_Chr6g0258951' => 'rch', 'RcHm_v2.0_Chr6g0306551' => 'rch', 'RcHm_v2.0_Chr7g0215011' => 'rch', 'Rhsim01G0216100' => 'rsi', 'Rhsim02G0114100' => 'rsi', 'Rhsim02G0161200' => 'rsi', 'Rhsim05G0125900' => 'rsi', 'Rhsim08G0226600' => 'rsi', 'Rhsim13G0094600' => 'rsi', 'Sabra01G0152300' => 'sbr', 'Sabra03G0028600' => 'sbr', 'Sabra04G0142800' => 'sbr', 'Sabra06G0185700' => 'sbr', 'Sabra09G0007500' => 'sbr', 'Sabra11G0084500' => 'sbr', 'Sabra11G0090600' => 'sbr', 'Sabra16G0244700' => 'sbr', 'Sabra18G0044500' => 'sbr', 'SalBow2G0756' => 'sbo', 'SalBow3G1335' => 'sbo', 'SalBow3G1662' => 'sbo', 'SalBow3G1975' => 'sbo', 'SalBow4G1575' => 'sbo', 'SalBow7G4132' => 'sbo', 'SalBow8G4875' => 'sbo', 'Sc06g0010280' => 'sci', 'Sc09g0009370' => 'sci', 'Sc12g0009610' => 'sci', 'Sc15g0001460' => 'sci', 'Sc15g0002080' => 'sci', 'Sed0001110' => 'sed', 'Sed0002665' => 'sed', 'Sed0004348' => 'sed', 'Sed0006144' => 'sed', 'Sed0006198' => 'sed', 'Sed0012002' => 'sed', 'Sed0012296' => 'sed', 'Sed0012952' => 'sed', 'Sed0017246' => 'sed', 'Sed0025409' => 'sed', 'Sed0025540' => 'sed', 'SEGI_00526' => 'sgi', 'SEGI_06674' => 'sgi', 'SEGI_13683' => 'sgi', 'SEGI_17801' => 'sgi', 'SEGI_20058' => 'sgi', 'SEGI_26444' => 'sgi', 'SEGI_31662' => 'sgi', 'SGA_v2.0_scaffold14G06824' => 'sas', 'SGA_v2.0_scaffold14G06825' => 'sas', 'SGA_v2.0_scaffold174G39208' => 'sas', 'SGA_v2.0_scaffold180G39671' => 'sas', 'SGA_v2.0_scaffold223G42862' => 'sas', 'SGA_v2.0_scaffold243G44285' => 'sas', 'SGA_v2.0_scaffold2G00886' => 'sas', 'SGA_v2.0_scaffold341G49349' => 'sas', 'SGA_v2.0_scaffold51G18652' => 'sas', 'SGA_v2.0_scaffold51G18684' => 'sas', 'SGA_v2.0_scaffold66G22542' => 'sas', 'SGA_v2.0_scaffold68G22964' => 'sas', 'SHI20701' => 'shi', 'SMO134G0244' => 'smo', 'SMO364G0323' => 'smo', 'SMO367G0995' => 'smo', 'Solyc01g057960.3' => 'sly', 'Solyc02g024070.3' => 'sly', 'Solyc03g120910.4' => 'sly', 'Solyc06g011670.1' => 'sly', 'Solyc08g066500.4' => 'sly', 'Solyc11g069470.3' => 'sly', 'Solyc12g020120.2' => 'sly', 'Solyc12g044410.2' => 'sly', 'Sopen01g023350' => 'spe', 'Sopen02g006800' => 'spe', 'Sopen02g018990' => 'spe', 'Sopen03g039740' => 'spe', 'Sopen08g015000' => 'spe', 'Sopen08g020320' => 'spe', 'Sopen11g028190' => 'spe', 'Sopen12g022680' => 'spe', 'Sopen12g027030' => 'spe', 'Sp1g26330' => 'spa', 'Sp1g38700' => 'spa', 'Sp4g16990' => 'spa', 'Sp5g16120' => 'spa', 'Sp6g22260' => 'spa', 'Sp7g30650' => 'spa', 'TAR375G0125' => 'tar', 'TAR383G0210' => 'tar', 'TAR624G0486' => 'tar', 'TAR624G1100' => 'tar', 'TAR626G1546' => 'tar', 'TAR627G0893' => 'tar', 'TAR629G1570' => 'tar', 'TAR633G0969' => 'tar', 'TAR636G0450' => 'tar', 'THA.LOC104798602' => 'tha', 'THA.LOC104799506' => 'tha', 'THA.LOC104803755' => 'tha', 'THA.LOC104810536' => 'tha', 'THA.LOC104810860' => 'tha', 'THA.LOC104812688' => 'tha', 'THA.LOC104817963' => 'tha', 'Thecc.06G001600' => 'tca', 'Thecc.06G098100' => 'tca', 'Thecc.09G046200' => 'tca', 'Thecc.09G341600' => 'tca', 'Thhalv10006792m.g' => 'esa', 'Thhalv10011238m.g' => 'esa', 'Thhalv10012678m.g' => 'esa', 'Thhalv10016241m.g' => 'esa', 'Thhalv10024403m.g' => 'esa', 'TPR.G11615' => 'tpr', 'TPR.G15093' => 'tpr', 'TPR.G15246' => 'tpr', 'TPR.G15561' => 'tpr', 'TPR.G26326' => 'tpr', 'TPR.G3209' => 'tpr', 'TPR.G35010' => 'tpr', 'TPR.G37173' => 'tpr', 'TPR.G7504' => 'tpr', 'TWI09G1143' => 'twi', 'TWI12G0681' => 'twi', 'TWI18G1274' => 'twi', 'TWI31G0014' => 'twi', 'TWI34G1195' => 'twi', 'TWI53G2086' => 'twi', 'TWI63G0442' => 'twi', 'TWI73G0776' => 'twi', 'TWI75G0904' => 'twi', 'TWI75G1538' => 'twi', 'TWI79G0356' => 'twi', 'unitig_26.g9775' => 'ugi', 'unitig_37.g12079' => 'ugi', 'unitig_747.g21995' => 'ugi', 'unitig_748.g7512' => 'ugi', 'unitig_749.g13812' => 'ugi', 'unitig_899.g14919' => 'ugi', 'vmacro03200' => 'vma', 'vmacro10974' => 'vma', 'vmacro14434' => 'vma', 'vmacro18861' => 'vma', 'vmacro22054' => 'vma', 'VMungo0251G0321' => 'vmu', 'VMungo0331G2002' => 'vmu', 'VMungo0540G2330' => 'vmu', 'VMungo1080G0694' => 'vmu', 'VMungo1127G1235' => 'vmu', 'VMungo1309G0921' => 'vmu', 'Zm00001eb000690' => 'zma', 'Zm00001eb031670' => 'zma', 'Zm00001eb045630' => 'zma', 'Zm00001eb050660' => 'zma', 'Zm00001eb117360' => 'zma', 'Zm00001eb136060' => 'zma', 'Zm00001eb145820' => 'zma', 'Zm00001eb172330' => 'zma', 'Zm00001eb218730' => 'zma', 'Zm00001eb337970' => 'zma', 'Zm00001eb404260' => 'zma' ) $gf_id = 'HOM05D000724' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000724' ) $data_identifier = 'HOM05D000724' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 6, 'sun' => (int) 9, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 14, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 13, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 11, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404260' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1